Genome & ID Search
Search all seven Daphnia annotations by gene name, locus, GeneID, transcript, protein, or supported legacy ID.
Search, annotation maps, FASTA & GenBankDAPHNIA GENOMICS WORKSPACE
Daphnia Browser
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CREATED BY
Jae Hyo Song
Sen Xu Lab
University of Missouri
LOCAL RESEARCH PLATFORM
Private workspace
Search all seven annotations by default · TryPress / to focus search
Guest demo · Photo-lyaseSearch Photo-lyase and try the complete workflow with LOC116919804. Other genes and unrestricted inputs require sign-in.
Explore Daphnia Browser
These tools use local reference genomes, published RNA-seq datasets, curated databases, and bounded analysis workflows.
Published Expression
Review the GSE264123 anatomical atlas and GSE150820 embryo RNA-seq evidence with appropriate dataset-specific scales.
Anatomy view, TPM/RPKM, DESeq2 evidenceProtein Evidence
Inspect reviewed-homolog annotation candidates and verified cached InterPro domain/signature matches.
Swiss-Prot, InterProScan, domain architectureExploratory Phylogeny
Compare a protein across sampled metazoan homologs or within any selected Daphnia proteome.
DIAMOND, FAMSA, FastTree, SVG exportPrimer & CRISPR Design
Design primers, screen reference-genome specificity, discover SpCas9 guides, and inspect bounded BLAST+ off-target candidates.
Primer screening, Azimuth, CFD, off-targetsLow-load Workbench
Convert exact IDs, collect genes locally, build multi-gene heatmaps, browse precomputed domains, and print evidence reports.
ID Converter, My Gene List, heatmap, reportsGuest mode exposes one server-enforced Photo-lyase example. Verified cached protein analyses are reused where available; arbitrary genes, sequences, and unrestricted jobs remain blocked.
Lists & Batch Tools — Sign in or register to use gene lists, ID conversion, batch downloads, heatmaps, reports, and the Domain Browser. All general gene and analysis tools are available without signing in.
LISTS & BATCH TOOLSResearch toolsID converter · Gene lists · Expression heatmaps · Reports · DomainsOpen tools
ID Converter
Exact gene, transcript, protein, and legacy identifiers.
Ambiguous mappings remain ambiguous.
My Gene List
Private in this browser; no list or notes are uploaded.
0 saved genes
Multi-gene Expression Heatmap
Compare up to 100 saved genes without starting an analysis job.
Add genes to My Gene List first.
Precomputed Domain & Family Browser
Verified cached InterProScan signatures; no scan is started.
Missing means not precomputed, not no domain.
NIES Best-hit Annotation List
Convert gene or protein IDs from the seven supported Daphnia annotations into precomputed NIES correspondence evidence.
No new analysis is started. Unmatched IDs and ambiguous mappings are retained.
Only existing Daphnia reference IDs are supported; IDs from other organisms require a separate sequence-mapping analysis. A best hit is not proof of orthology. Gene rows summarize the strongest protein isoform.
Search a gene to begin
Search all seven Daphnia genome annotations at once, then open any candidate in its assembly-specific workspace.
1Choose the search scopeAll genomes or only the active assembly
2Search any identifierGene name, legacy ID, locus tag, protein, or product
3Open an analysis tabExpression, protein evidence, exploratory tree, domains, or sequence tools